SNP Profiles of POUND 7B View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
1._POUND_7_/B	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
2._GC-01-114-6-11	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
3._GC-01-114-6-11	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
4._GC-01-114-6-11	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
5._GC-01-114-6-11	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
6._GC-01-114-6-11	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
7._GC-01-114-6-11	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
8._GC-01-114-6-11	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
9._GC-01-114-6-11	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
10._POUND_7_/B	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
11._POUND_7_/B	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
12._POUND_7_/B	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
13._POUND_7_/B	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
14._POUND_7_/B	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
15._POUND_7_/B	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
16._POUND_7_/B	CC	AA	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
17._RUQ_24	_	AA	CC	TT	_	_	_	TT	_	_	_	_	CT	AG
18._RUQ_24	CC	AG	CC	TT	TT	AA	TT	TT	CC	CC	AA	GG	CT	AG
19._RUQ_24	GG	AA	GG	AA	AA	AA	AA	AA	_	_	AA	GG	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
1._POUND_7_/B	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
2._GC-01-114-6-11	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
3._GC-01-114-6-11	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
4._GC-01-114-6-11	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
5._GC-01-114-6-11	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
6._GC-01-114-6-11	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
7._GC-01-114-6-11	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
8._GC-01-114-6-11	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
9._GC-01-114-6-11	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
10._POUND_7_/B	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
11._POUND_7_/B	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
12._POUND_7_/B	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
13._POUND_7_/B	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
14._POUND_7_/B	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
15._POUND_7_/B	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
16._POUND_7_/B	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
17._RUQ_24	_	_	_	_	-	CC	GG	_	CT	AA	GG	GT	CT	CC
18._RUQ_24	CT	AA	GG	CT	CT	CC	GG	AA	CT	AA	GG	GT	CT	CC
19._RUQ_24	AG	AA	GG	AG	AG	GG	CC	_	AG	AA	GG	AC	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
1._POUND_7_/B	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
2._GC-01-114-6-11	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
3._GC-01-114-6-11	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
4._GC-01-114-6-11	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
5._GC-01-114-6-11	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
6._GC-01-114-6-11	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
7._GC-01-114-6-11	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
8._GC-01-114-6-11	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
9._GC-01-114-6-11	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
10._POUND_7_/B	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
11._POUND_7_/B	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
12._POUND_7_/B	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
13._POUND_7_/B	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
14._POUND_7_/B	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
15._POUND_7_/B	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
16._POUND_7_/B	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
17._RUQ_24	AA	_	AA	CT	AA	CC	AA	CT	GG	AC	_	_	X_X	X_X
18._RUQ_24	AA	GG	AA	CT	AA	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
19._RUQ_24	_	GG	AA	AG	AA	GG	AA	AG	CC	AC	TT	GG	X_X	X_X

Input profile: POUND_7_/B

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Mars Center for Cocoa Science, Brazil

Location: 1611 3

Dapeng Zhang, 2016

1._POUND_7_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 1 > FP

Dapeng Zhang, 2016

2._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

3._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP4

4._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

5._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

6._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

7._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._POUND_7_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 4 > FP

Dapeng Zhang, 2016

11._POUND_7_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 11 > F

Dapeng Zhang, 2016

12._POUND_7_/B

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1611 10 > F

Dapeng Zhang, 2016

13._POUND_7_/B

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1611 13

Dapeng Zhang, 2016

14._POUND_7_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 9

Dapeng Zhang, 2016

15._POUND_7_/B

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1611 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._POUND_7_/B

identical
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F407 T3

Dapeng Zhang, 2016

17._POUND_7_/B RUQ_24

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._POUND_7_/B RUQ_24

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

19._POUND_7_/B RUQ_24

48.6 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25